In the context of the transformation of rural governance， how can village⁃level organizations find their own institutional position within the dual structure of institutional rigidity and social structure changes？ The generation logic and adjustment mechanism urgently need theoretical responses. Most existing studies focus on the practical logic and adjustment process of formal organizations in grassroots political power， while neglecting the practical mechanism of how village⁃level organizations， which are legally defined as autonomous organizations， deal with multi⁃governance matters. Therefore， based on the theoretical connotation of simplified governance， this paper proposes an analytical framework of "classified governance" to explore the adjustment mechanism and governance logic of village⁃level organizations. The research found： Village⁃level organizations classify village affairs into three types by identifying of their attributes. On the basis of optimizing the allocation of resources and dealing with the primary division of labor， party organizations established party branches in rural society to provide the organizational foundation for the classification of governance of village⁃level organizations. Under the integration of the Party branches， classified governance is displayed in the following practices： key and central issues are united in the governance mechanisms of party committees， conventional administrative matters implement governance mechanisms through procedures， and village⁃intrinsic matters embed governance mechanisms through relations. Categorized governance is premised on the flexibility space provided by institutional empowerment， which allows village governance agents to maintain their ownership and flexibility. Classified governance is the fundamental logic for maintaining the vitality of China's rural governance system. This governance logic transcends the binary division and contradiction between the state and society in the Western context， and constructs a new governance pattern with Chinese characteristics where the state and society coexist and support each other.